Function reference • GeneCodeR

All functions

extract_config_framework(): extract_config_framework - the configuration framework for GeneCodeR

extract_meta_framework(): extract_meta_framework - the meta information framework for GeneCodeR

extract_path_framework(): extract_path_framework - the path list framework for GeneCodeR

genecoder(): GeneCodeR - Perturbing imaging tissue by altering spatial gene codes

genecoder.transform(): genecoder.transform - transform between modalities

learn_model(): learn_model - learns the Generative Encoder model

prepare_gex(): prepare_gex - prepares gene expression data

prepare_spot(): prepare_spot - prepares image information per spot